Revision 0.4.4: |
- add missing MANIFEST to include requirements used in bioconda
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Revision 0.4.3: |
- move all converters related code (now in biokit/bioconvert project)
- Fixed deprecated issues in stats/mixture (pylab.normpdf changed to
scipy.stats.norm.pdf
- Fix doc gallery
- BUG: fix fasta module test and cleanup FASTA class
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Revision 0.4.2: |
- UPDATE: starting converter tool in converter sub-package
- UPDATE: replace axibg with facecolor (matplotlib deprecated name)
- REFACTORING: rtools sub-package.should not affect user interface
- BUG: fixed corrplot layout due to new matplotlib API and new Pandas API
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Revision: | 0.4.1
- BUG: fix rtools sub-packages for Python3 portage
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Revision: | 0.4.0
- Stable version on bioconda (remove sphinx-gallery from dependencies since
it is only used for the documentation.
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Revision: | 0.3.4
- remove stats_dev sub_directory
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Revision: | 0.3.3
- EM class has a new plot function so that a plot can be run without doing
the estimation but by providing the parameter of the model. This is a
better model/data/view abstraction.
- Fix tests in documentation
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Revision: | 0.3.2:
- remove deprecated warning
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Revision: | 0.3.1:
- Update mixture.EM method to speedup the code by factor 4
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Revision: | 0.3.0:
- Cleanup and doc update
- Update notebooks to be py3.5 compatible
- Some API changes in the Taxonomy module used in Sequana package
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Revision 0.2.0: |
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Revision 0.1.4: |
- BUG FIXES: cleanup MANIFEST
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Revision 0.1.3: |
BUG FIXES:
- a py3 typo.
- fixing complexes module
- remove useless db package
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Revision 0.0.7: |
- NEWS
- add taxonomy module.
- add goid module.
- Fixed bunch of Python3 issues. most important in rtools packages
to use Popen instead of popen4 and manipulate bytes vs strings.
- All tests passes under Python2.7 and Python3.4
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Revision 0.0.6: |
- CHANGES
- viz package:
- refactored most of the functions/classes to be have more
consistent input data for the constructor and more consistent
parameters for the plot() methods.
- Hist2d is now called Hist2D
- BUG FIXES
- NEWS
- add new module in viz package: hinton, core (to factorise code)
- add new notebooks related to the viz package.
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